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Getting Started

16
  • Quick Start Guide
  • Papers Desktop vs Web App
  • Revert to Papers Classic
  • Papers Pro FAQ
  • What shortcuts are presently supported
  • How to Import Content into Papers Reference Manager
  • Migrating from Mendeley to Papers
  • Importing Your Library From Endnote
  • Import From Another Reference Manager
  • How to Import Content into Your Papers Library via CSV
  • How to Add Metadata-Only References to Your Papers Library
  • Import by Use of .ris File From External Database – With PDFs and Without PDFs
  • How to Import Records from ClinicalTrials.gov into Papers
  • Article Matching (Manual and With Helper)
  • Metadata Resolving & Incomplete Records
  • How to Import Pubmed .Nbib Files Into Papers

Installation and Setup

5
  • How to toggle dark mode in the Papers desktop app
  • Papers System Requirements: What You Need to Get Started
  • Installing the Papers Desktop Application
  • How To Set Up My Institutional Proxy in Papers?
  • How to get Help/Support

Papers AI Assistant

4
  • Introduction to AI Assistant
  • Chat with PDF
  • AI Assisted Query Builder (Papers Pro)
  • Chat with your Library with AI Assistant (Papers Pro)

Browser Extension

8
  • Save to Library Feature
  • What Browser Versions Support the Papers Web App?
  • How to Import References from Web Pages and Search Results
  • How to Install the Papers Browser Extension
  • What Do the Browser Extensions Buttons Mean?
  • How to deploy the Papers Chrome extension via GPO
  • About the Extension Sidebar
  • Browser Extension on Google Scholar

Search & Discover

9
  • Full text search
  • Advanced Searching (in library)
  • Query Builder
  • Find Related Articles Using the Papers Reader
  • Introduction to Papers Query Builder
  • What are Papers Recommendations?
  • Introduction to Papers Search
  • Save searching options in Papers
  • Importing Grey Literature Into Papers

Read & Annotate

12
  • PDF Reader Overview
  • Annotation Options in the PDF Reader
  • How to View Supplementary Files in Reference Entries
  • How to Enable Dark Mode for the Reader?
  • How can I view figures in the Reader?
  • How Can I Navigate Directly From an Inline Citation to an Article/Reference?
  • How to Export PDF Notes
  • How to View an Article’s Full Reference List in the Reader
  • How to View Supplementary Information in Reader
  • Print PDF with my highlights attached
  • Enable Dark Mode for the Reader
  • How To Download the PDF Version of an Article From the Reader

Organize

13
  • Downloading PDFs/Offline Access
  • Citekey Management
  • File Management
  • How to Organize Articles in Papers: A Step-by-Step Guide
  • Papers Library View: Customizing Your Library
  • Introduction to Smart Lists
  • Introduction to Custom Fields
  • Watch Folders
  • Duplicate Merging During Import
  • Citing organizations as authors
  • Authors with multi-text names
  • CSV Import/Export
  • An Article Was Mislabelled as a Supplement (Or Vice Versa)

Collaboration

4
  • Collection not accessible
  • Introduction to Public Lists
  • What Are the Permissions of a Shared Library?
  • How Do I Create a Shared Library?

Library & Device Sync

3
  • How to Enable Additional Sources in the Papers PDF Reader
  • Syncing Your Library Offline
  • How to connect Papers with Overleaf

Mobile

2
  • Double-page PDF view in Papers mobile app
  • Papers mobile app overview

SmartCite

11
  • Vancouver citation style renamed
  • How to use footnotes with SmartCite?
  • Converting an EndNote formatted document into SmartCite
  • Introduction to SmartCite for Citekeys
  • How do I add a custom citation style to the SmartCite Add-in?
  • Converting SmartCite Citations into EndNote Friendly Format
  • Update/Change Citation Style in SmartCite
  • Customizing Inline Citations
  • Using section bibliographies in SmartCite
  • Citing organizations as authors in Papers
  • Using hyperlinks in SmartCite bibliography

Accounts & Billing

4
  • Papers Refund Policy
  • What is ReadCube?
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Metadata Resolving & Incomplete Records

When it comes to resolving metadata, Papers handles this in slightly different ways, depending on how you import your references.

There are three ways you can import references to Papers and they will impact how the app fetches and resolves reference metadata.

The first way is by manually adding references to the library (by using the “Create Manual Entry” option) – in this case you manually input the metadata, including identifiers. The app does not check any data at this point and if the user does not manually trigger a metadata check, the data will remain as is.

Another way of importing references is by using our .bib, .ris or .csv import options – in this case, the app will run a metadata check for each imported reference. Those references that have identifiers will be processed, while those without identifiers will remain as imported (and metadata will remain unchanged).

When importing references through our browser extension or from a file, the app will run a metadata check for each imported reference unless there is no identifier. In that case the file will be imported as is and no metadata created (and you will need to input associated metadata manually by editing the reference).

For unresolved metadata and incomplete records, users can try to resolve it and fill in those records through two options: the “Update details” option and the “Match” feature.

The “Update details” option will only be available in case the reference already has an identifier, and can be done by right-clicking on the reference and selecting the option from the drop-down menu.

The “Match” option is available when a reference has a PDF attached – in this case right-clicking the reference will allow users to select the “Match” option. This will open a preview window with the contents of the PDF, as well as a sidebar that allows users to edit which information to use when trying to match the metadata to the reference. An important thing to note – an identifier is not necessary in this case as our app will check our internal database and offer a list of potential matches.

We cover this whole process in more detail in our matching article:

Article Matching (Manual and With Helper)

If either of the two options do not fill in incomplete records, users can edit the reference and input missing metadata manually.

Note: when references are imported to the library, Papers will always try to preserve fidelity of the user’s data. This won’t be the case for information such as authors/title/abstract/etc., but any data that was manually entered by the user, such as date/notes/other fields – will be preserved.

Note 2: Our main identifier is DOI and our application heavily relies on it. There are secondary identifiers, such as ISBN or PMID, which can help with matching functionality, but our main metadata check goes through the DOI. Using a correct DOI is a guaranteed way to ensure a positive metadata match when updating/matching references.

In case you have any questions about this process let us know, either through our support portal or directly via our support email.

Updated on July 18, 2025

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Article Matching (Manual and With Helper)How to Import Pubmed .Nbib Files Into Papers
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