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Getting Started

12
  • Import From Another Reference Manager
  • How to Import Records from ClinicalTrials.gov into Papers
  • How to Add Metadata-Only References to Your Papers Library
  • Revert to Papers Classic
  • Import by Use of .ris File From External Database – With PDFs and Without PDFs
  • Papers Pro FAQ
  • Papers Desktop vs Web App
  • Quick Start Guide
  • How to Import Content into Papers Reference Manager
  • Importing Your Library From Endnote [Papers Desktop]
  • Article Matching (Manual and With Helper)
  • How to Import Pubmed .Nbib Files Into Papers

Installation and Setup

4
  • Papers System Requirements: What You Need to Get Started
  • Installing the Papers Desktop Application
  • How To Set Up My Institutional Proxy in Papers?
  • How to get Help/Support

Papers AI Assistant

4
  • Introduction to AI Assistant
  • Papers AI Chat with PDF
  • AI Assisted Query Builder (Papers Pro)
  • Chat with your Library with AI Assistant (Papers Pro)

Browser Extension

11
  • What Browser Versions Support the Papers Web App?
  • The Browser Extension on Non Supported Websites
  • How to Import References from Web Pages and Search Results
  • How to Upgrade Your Chrome Extension to Manifest Version 3 (MV3)
  • How to Install the Papers Browser Extension
  • What Do the Browser Extensions Buttons Mean?
  • How to deploy the Papers Chrome extension via GPO
  • About the Extension Sidebar
  • Papers Browser Extension
  • Browser Extension on Google Scholar
  • How to Enable Additional Sources in the Papers Browser Extension

Search & Discover

8
  • Advanced Searching (in library)
  • Query Builder
  • Find Related Articles Using the Papers Reader
  • Introduction to Papers Query Builder
  • What are Papers Recommendations?
  • Introduction to Papers Search
  • Save searching options in Papers
  • Importing Grey Literature Into Papers

Read & Annotate

14
  • How to View Supplementary Files in Reference Entries
  • How to Enable Dark Mode for the Reader?
  • How can I view figures in the Papers Reader?
  • How Can I Navigate Directly From an Inline Citation to an Article/Reference?
  • The Papers Enhanced PDF Reader (ePDF)
  • How to Export PDF Notes
  • How to View an Article’s Full Reference List in Papers Web Reader
  • How to View Supplementary Information in Papers Reader
  • How to View Supplementary Files in Reference Entries
  • Print PDF with my highlights attached
  • Papers Enhanced PDF Reader (ePDF)
  • Enable Dark Mode for the Reader
  • Annotation Options in the Papers PDF Reader
  • How To Download the PDF Version of an Article From the Papers Reader

Organize

9
  • Authors with multi-text names
  • Introduction to Smart Lists
  • How Do I Organize My Articles in Papers?
  • An Article Was Mislabelled as a Supplement (Or Vice Versa)
  • How to export files from the Papers web application
  • How to Organize Articles in Papers: A Step-by-Step Guide
  • CSV Import/Export
  • How to Export Your Papers Library With and Without PDFs
  • Duplicate Merging During Import

Collaboration

2
  • What Are the Permissions of a Shared Library?
  • How Do I Create a Shared Library?

Library & Device Sync

2
  • Syncing Your Library Offline
  • How to connect Papers with Overleaf

Mobile

2
  • Double-page PDF view in Papers mobile app
  • Papers mobile app overview

SmartCite

4
  • How do I add a custom citation style to the SmartCite Add-in?
  • Converting SmartCite Citations into EndNote Friendly Format
  • Update/Change Citation Style in SmartCite
  • Customizing Inline Citations

Accounts & Billing

2
  • What is ReadCube?
  • Upgrade from Papers to ReadCube
  • Home
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  • SmartCite

Converting SmartCite Citations into EndNote Friendly Format

If you are working on a document and need to share it with a colleague who uses EndNote, while you can have your collaborator use a trial license to SmartCite (allows 30-days of access), you can also convert your SmartCite-formatted to a format that can be imported into EndNote. While SmartCite has a conversion tool for EndNote, EndNote does not offer the same cross-compatibility (with Papers or any other tool). While this workflow is more manual than we would like, in the interim, it provides a relatively simple way to allow an Endnote user to work with a document created in SmartCite.

Getting Started:

IMPORTANT: It is essential for any references that have been added to the document via SmartCite also exist within the EndNote library for the connection to be made. If you are not sure if this is the case, you should export a list of all references in the existing document as a BIB file and import it to Endnote prior to doing the conversion. BIB is a file format that can be used to import Papers references into EndNote. If you don’t want to transfer your entire Papers library, there’s an easy way you can export just the references used in a given Word document created in SmartCite. 

Exporting Reference List:

  1. Use the “List of active references” tool under the REFERENCES tab. 
  2. Click on that and give your new list a name and using Save To dropdown, choose what library you would like to save the list to (personal/shared). 
  3. Next, find the library in app.papersapp.com and select all items in that list (use CTRL + A on Windows or Command + A to select all items in the list. 
  4. Right-click the selected items to reveal the secondary menu. Choose EXPORT > BIB. 
  5. That will download the BIB file to your desktop to it can be shared and added to Endnote to ensure all references exist in both tools. Your collaborator will be able to add the BIB file to their EndNote library easily.

SmartCite Steps:

With your document with SmartCite open, go to OPTIONS panel. Use this link to download the Papers to Endnote style to your desktop. Download the file using the button in the top right of the screen. 

Go to “Manage Custom Bibliography Styles” and upload the CSL file you just downloaded. You only need to do this step once. 

Before you update the document, we always recommend saving a copy, so you have the original to compare the new formatting with. 

Once uploaded, you can go to the BIBLIOGRAPHY tab and see the new style at the top. Click on it and go to “Update Bibliography” at the bottom.

Save your newly formatted document. 

EndNote Steps: 

Go to the Endnote toolbar in Word and select the “Update Citations and Bibliography” feature.  It looks like this:   

Endnote will now iterate through every inline citation in your document and attempt to match each one with a reference in your Endnote library.  You will see a prompt appear for each reference, where Endnote will show you the matched record.  Review each match and click “Insert” to confirm.  Once yo

Updated on April 30, 2025

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