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Getting Started

16
  • Quick Start Guide
  • Papers Desktop vs Web App
  • Revert to Papers Classic
  • Papers Pro FAQ
  • What shortcuts are presently supported
  • How to Import Content into Papers Reference Manager
  • Migrating from Mendeley to Papers
  • Importing Your Library From Endnote
  • Import From Another Reference Manager
  • How to Import Content into Your Papers Library via CSV
  • How to Add Metadata-Only References to Your Papers Library
  • Import by Use of .ris File From External Database – With PDFs and Without PDFs
  • How to Import Records from ClinicalTrials.gov into Papers
  • Article Matching (Manual and With Helper)
  • Metadata Resolving & Incomplete Records
  • How to Import Pubmed .Nbib Files Into Papers

Installation and Setup

5
  • How to toggle dark mode in the Papers desktop app
  • Papers System Requirements: What You Need to Get Started
  • Installing the Papers Desktop Application
  • How To Set Up My Institutional Proxy in Papers?
  • How to get Help/Support

Papers AI Assistant

4
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  • Chat with PDF
  • AI Assisted Query Builder (Papers Pro)
  • Chat with your Library with AI Assistant (Papers Pro)

Browser Extension

8
  • Save to Library Feature
  • What Browser Versions Support the Papers Web App?
  • How to Import References from Web Pages and Search Results
  • How to Install the Papers Browser Extension
  • What Do the Browser Extensions Buttons Mean?
  • How to deploy the Papers Chrome extension via GPO
  • About the Extension Sidebar
  • Browser Extension on Google Scholar

Search & Discover

9
  • Full text search
  • Advanced Searching (in library)
  • Query Builder
  • Find Related Articles Using the Papers Reader
  • Introduction to Papers Query Builder
  • What are Papers Recommendations?
  • Introduction to Papers Search
  • Save searching options in Papers
  • Importing Grey Literature Into Papers

Read & Annotate

12
  • How to View Supplementary Files in Reference Entries
  • How to Enable Dark Mode for the Reader?
  • How can I view figures in the Reader?
  • How Can I Navigate Directly From an Inline Citation to an Article/Reference?
  • How to Export PDF Notes
  • How to View an Article’s Full Reference List in the Reader
  • How to View Supplementary Information in Reader
  • Print PDF with my highlights attached
  • Guide to the Reader
  • Enable Dark Mode for the Reader
  • Annotation Options in the PDF Reader
  • How To Download the PDF Version of an Article From the Reader

Organize

15
  • Downloading PDFs/Offline Access
  • Citekey Management
  • File Management
  • How to Organize Articles in Papers: A Step-by-Step Guide
  • Papers Library View: Customizing Your Library
  • Introduction to Smart Lists
  • Introduction to Custom Fields
  • Watch Folders
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  • Citing organizations as authors
  • Authors with multi-text names
  • CSV Import/Export
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  • How to Export Your Papers Library With and Without PDFs
  • An Article Was Mislabelled as a Supplement (Or Vice Versa)

Collaboration

4
  • Collection not accessible
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Library & Device Sync

3
  • How to Enable Additional Sources in the Papers PDF Reader
  • Syncing Your Library Offline
  • How to connect Papers with Overleaf

Mobile

2
  • Double-page PDF view in Papers mobile app
  • Papers mobile app overview

SmartCite

11
  • Vancouver citation style renamed
  • How to use footnotes with SmartCite?
  • Converting an EndNote formatted document into SmartCite
  • Introduction to SmartCite for Citekeys
  • How do I add a custom citation style to the SmartCite Add-in?
  • Converting SmartCite Citations into EndNote Friendly Format
  • Update/Change Citation Style in SmartCite
  • Customizing Inline Citations
  • Using section bibliographies in SmartCite
  • Citing organizations as authors in Papers
  • Using hyperlinks in SmartCite bibliography

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4
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Article Matching (Manual and With Helper)

When you import articles into Papers, they are automatically matched to metadata thanks to our automatic matching feature. However, sometimes you may need to rematch metadata manually. 

If an item is not matched with metadata automatically on import, an option to “Match” it will appear both when you right-click on the item in your library and in the sidebar info panel of the item.

Note: The matching helper is currently only available for references that have a PDF.

Image of the Match option for manual matching
Image of Match option for manual matching on right-click

When you activate the matching helper, it will take a second pass at the paper and try to match the PDF to metadata automatically. In case it is unable to do so, you can manually match it.

An option to manually match will appear, allowing you to either select a part of the metadata in the PDF preview to use for a new search, or you can simply input a part of the metadata and run a new search.

Image of metadata review and manual input for matching
Image showing possible matches when manually matching metadata
Image showing a matched article after manually matching metadata with PDF

Other Metadata Options

Right-clicking on a reference will show you a number of options, including the section that allows you to edit, clear and update metadata.

Image showing other options for metadata editing

Edit Details

Edit Details will bring up the metadata editing panel, including the PDF preview, so you can manually edit the fields and populate the metadata.

Clear Details

Clear Details will erase all metadata from the reference. The name will revert back to the original download/PDF name. From here you can repopulate all the metadata fields manually or use “Match” option to try and repopulate it automatically.

Update Details

Selecting Update Details will rerun the matcher and populate any missing metadata fields.

***

Papers Classic

(the following instructions are for the classic version of Papers)

When articles are imported into Papers they are automatically matched to the metadata so you know exactly what the article is. Sometimes, you may need to rematch metadata. 

If an item is not matched with metadata automatically on import, you will have the option to “Match” both when right-clicking on the item in your library and in the sidebar info panel of the item. 

Note: Currently, our matching helper is only available with references that have a PDF.

Image of the Match option for manual matching in desktop application

When you activate the helper, it will take a second pass at the paper and try to match it automatically. If it is unable to find a match, you will have the option to select part of the metadata visible within a preview to run a new search for a match. Usually just part of the title or any identifier (DOI/PMID, etc.) will do.

Image of metadata review and manual input for matching in desktop application
Image showing possible matches when manually matching metadata in desktop application
Image showing a matched article after manually matching metadata with PDF in the desktop application

Other metadata update options

Image showing other options for metadata editing in desktop application

Edit Details

Edit Details will bring up the metadata editing panel, including the PDF preview, so you can easily copy the fields to populate the reference.

Clear Details

Clear Details will erase all metadata from the reference. The name will revert back to the original download name. From here you can repopulate all the metadata fields or use “Match” to find a match.

Update Details

Selecting Update Details will rerun the matcher and populate any missing metadata fields.

In case you are still experiencing matching issues check out our matcher do’s and don’ts when trying to find the correct article metadata.

Updated on January 30, 2025

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How to Import Records from ClinicalTrials.gov into PapersMetadata Resolving & Incomplete Records
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